PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13096502g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19017.4 Da    PI: 6.0334
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13096502g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.9e-23351249
                                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                                 +ien sn qvtfskRr+g++KKA+ELS+LC+aeva++ f+++ +k+y +
  Peinf101Ctg13096502g00001.1  3 KIENASNLQVTFSKRREGLFKKASELSTLCGAEVAILAFAPNsNKVYSF 51
                                 79*************************************9853788877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.357145IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-21154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-23283IPR002100Transcription factor, MADS-box
PfamPF003199.1E-24351IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAKIENASNL QVTFSKRREG LFKKASELST LCGAEVAILA FAPNSNKVYS FGHPCANEIM  60
DRYLARNPPK DETNNNNVNN ELIEAFRNSS IIDITNELNQ KEHELEMERK RGEALQAVRK  120
SKEACQHNWW EAPLKKLNYD QVQQVKEALE ELHYIVESEA EHQKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557539.11e-54PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ41e-51A0A067EEZ4_CITSI; Uncharacterized protein
STRINGPOPTR_0009s08750.12e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-42AGAMOUS-like 62